Citrus
KB
Knowledge Base for Transcriptome of Citrus Interactome
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Local Blast
Choose the
program
to use
blastn
blastp
blastx
tblastn
tblastx
Select the
database
to search
Control, 24H
Control, 48H
Control, 72H
Innoculated, 24H
Innoculated, 48H
Innoculated, 72H
Control, 24H
Control, 48H
Control, 72H
Innoculated, 24H
Innoculated, 48H
Innoculated, 72H
Control, 24H
Control, 48H
Control, 72H
Innoculated, 24H
Innoculated, 48H
Innoculated, 72H
Control, 24H
Control, 48H
Control, 72H
Innoculated, 24H
Innoculated, 48H
Innoculated, 72H
Control, 24H
Control, 48H
Control, 72H
Innoculated, 24H
Innoculated, 48H
Innoculated, 72H
Control, 24H
Control, 48H
Control, 72H
Innoculated, 24H
Innoculated, 48H
Innoculated, 72H
Control, 24H
Control, 48H
Control, 72H
Innoculated, 24H
Innoculated, 48H
Innoculated, 72H
Control, 24H
Control, 48H
Control, 72H
Innoculated, 24H
Innoculated, 48H
Innoculated, 72H
Citrus trifoliata EST (NCBI 053010)
Citrus clementina, v1.0
Citrus sinensis, v1.0
Merged transcriptoma found in all citrus RNA-seq
Enter sequence below in
FASTA
format
...or load it from disk
Set subsequence
From:
To:
The query sequence is
filtered
for low complexity regions by default.
Select
Filter
Low complexity
Mask for lookup table only
Expect
0.0001
0.01
1
10
100
1000
Matrix
PAM30
PAM70
BLOSUM80
BLOSUM62
BLOSUM45
Perform ungapped alignment
Query Genetic Codes (blastx only)
Standard (1)
Vertebrate Mitochondrial (2)
Yeast Mitochondrial (3)
Mold Mitochondrial; ... (4)
Invertebrate Mitochondrial (5)
Ciliate Nuclear; ... (6)
Echinoderm Mitochondrial (9)
Euplotid Nuclear (10)
Bacterial (11)
Alternative Yeast Nuclear (12)
Ascidian Mitochondrial (13)
Flatworm Mitochondrial (14)
Blepharisma Macronuclear (15)
Database Genetic Codes (tblast[nx] only)
Standard (1)
Vertebrate Mitochondrial (2)
Yeast Mitochondrial (3)
Mold Mitochondrial; ... (4)
Invertebrate Mitochondrial (5)
Ciliate Nuclear; ... (6)
Echinoderm Mitochondrial (9)
Euplotid Nuclear (10)
Bacterial (11)
Alternative Yeast Nuclear (12)
Ascidian Mitochondrial (13)
Flatworm Mitochondrial (14)
Blepharisma Macronuclear (15)
Frame shift penalty
for blastx
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
25
30
50
1000
No OOF
Other advanced options:
Graphical Overview
Alignment view
Pairwise
master-slave with identities
master-slave without identities
flat master-slave with identities
flat master-slave without identities
BLAST XML
Hit Table
Alignments
0
10
50
100
250
500
Descriptions
0
10
50
100
250
500
Color schema
No color schema
Color schema 1
Color schema 2
Color schema 3
Color schema 4
Color schema 5
Color schema 6
